PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078827.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 292aa    MW: 30295.4 Da    PI: 9.5551
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063356225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_011078827.1 33 KSKPCTKFFSTAGCPFGENCHFLH 56
                    7789******************** PP

2zf-CCCH27.17.4e-0998123227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt++C+ +     Ck+Gd+C+FaHg+
  XP_011078827.1  98 KTKICNKYKTAEGCKFGDKCHFAHGE 123
                     89**********************96 PP

3zf-CCCH36.77e-12259283126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +f++ G C +GdrC+FaHg
  XP_011078827.1 259 FKTKLCENFSK-GSCTFGDRCHFAHG 283
                     69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.773158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-63257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-73356IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.63896124IPR000571Zinc finger, CCCH-type
SMARTSM003560.001196123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-896127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-1497127IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-698123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.94E-16158235IPR004088K Homology domain, type 1
SMARTSM003221.3E-12164234IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.7E-17165233IPR004088K Homology domain, type 1
PROSITE profilePS5008414.823165229IPR004088K Homology domain, type 1
CDDcd001054.53E-15167229No hitNo description
PfamPF000132.3E-12167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16254289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8258288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474258285IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7258284IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9259283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDTRKRGRGE FANGGAKKSK SEIDSFSSGI GSKSKPCTKF FSTAGCPFGE NCHFLHYVPG  60
GYNAVAQMMN LAPAPAPTSR MLTGPLAVQN GSSAAAVKTK ICNKYKTAEG CKFGDKCHFA  120
HGEWELGKPI APSHEDPHSM GAIPNRFGGR PEAPIPGPAA SFGASATAKI SVDASLAGAV  180
IGKGGVNSKQ ICRQTGAKLA IRDHESDPNL RNIELEGSFE QIQQASAMVR ELIVSVGSAA  240
GPGKPMGATG GPPAPGSNFK TKLCENFSKG SCTFGDRCHF AHGAAELRKS GI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-119C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D81e-160B9T5D8_RICCO; Putative uncharacterized protein
STRINGVIT_08s0007g06400.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-64C3H family protein